C. A.  Hamilton, St Laurent, R. A., Dexter, K., Kitching, I. J., Breinholt, J. W., Zwick, A., Timmermans, M. J. T. N., Barber, J. R., and Kawahara, A. Y., ?Phylogenomics resolves major relationships and reveals significant diversification rate shifts in the evolution of silk moths and relatives.?, BMC Evolutionary Biology, vol. 19, pp. 182 [1-13], 2019.

J. W.  Breinholt, Earl, C., Lemmon, A. R., Moriarty_Lemmon, E., Xiao, L., and Kawahara, A. Y., ?Resolving relationships among the megadiverse butterflies and moths with a novel pipeline for anchored phylogenomics?, Systematic Biology, 2017.

T. J.  Hossie, Skelhorn, J., Breinholt, J. W., Kawahara, A. Y., and Sherratt, T. N., ?Body size affects the evolution of eyespots in caterpillars?, Proceedings of the National Academy of Sciences, vol. 112, no. 2, pp. 6664-6669, 2015.

F. V.  Ponce, Breinholt, J. W., Hossie, T., Barber, J. R., Janzen, D. H., Hallwachs, W., and Kawahara, A. Y., ?A molecular phylogeny of Eumorpha (Lepidoptera: Sphingidae) and the evolution of anti-predator larval eyespots?, Systematic Entomology, vol. 40, no. 2, pp. 401-408, 2015.

A. Y.  Kawahara, Breinholt, J. W., Ponce, F. V., Haxaire, J., Lei, X., Lamarre, G. P. A., Rubinoff, D., and Kitching, I. J., ?Evolution of Manduca sexta hornworms and relatives: biogeographical analysis reveals an ancestral diversification in Central America?, Molecular Phylogenetics and Evolution, vol. 68, no. 3, pp. 381-386, 2013.

J. W.  Breinholt and Kawahara, A. Y., ?Phylotranscriptomics: saturated third codon positions radically influence the estimation of trees based on next-gen data?, Genome Biology and Evolution, vol. 5, no. 11, pp. 2082-2092, 2013.