<?xml version="1.0" encoding="UTF-8"?><xml><records><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Regier, J.C.</style></author><author><style face="normal" font="default" size="100%">Mitter, C.</style></author><author><style face="normal" font="default" size="100%">Zwick, A.</style></author><author><style face="normal" font="default" size="100%">Bazinet, A.L.</style></author><author><style face="normal" font="default" size="100%">Cumming, M.P.</style></author><author><style face="normal" font="default" size="100%">Kawahara, A.Y.</style></author><author><style face="normal" font="default" size="100%">Sohn, J.-C.</style></author><author><style face="normal" font="default" size="100%">Zwickl, D.J.</style></author><author><style face="normal" font="default" size="100%">Cho, S.</style></author><author><style face="normal" font="default" size="100%">Davis, D.R.</style></author><author><style face="normal" font="default" size="100%">Baixeras, J.</style></author><author><style face="normal" font="default" size="100%">Brown, J.</style></author><author><style face="normal" font="default" size="100%">Parr, C.</style></author><author><style face="normal" font="default" size="100%">Weller, S.</style></author><author><style face="normal" font="default" size="100%">Lees, D.C.</style></author><author><style face="normal" font="default" size="100%">Mitter, K.T.</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">A large-scale, higher-Level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies)</style></title><secondary-title><style face="normal" font="default" size="100%">PLoS ONE</style></secondary-title></titles><keywords><keyword><style  face="normal" font="default" size="100%">109FIN</style></keyword><keyword><style  face="normal" font="default" size="100%">265FIN</style></keyword><keyword><style  face="normal" font="default" size="100%">268FIN</style></keyword><keyword><style  face="normal" font="default" size="100%">3007FIN</style></keyword><keyword><style  face="normal" font="default" size="100%">ACC</style></keyword><keyword><style  face="normal" font="default" size="100%">APODITRYSIA</style></keyword><keyword><style  face="normal" font="default" size="100%">BARCODING</style></keyword><keyword><style  face="normal" font="default" size="100%">BOOTSTRAP</style></keyword><keyword><style  face="normal" font="default" size="100%">CAD</style></keyword><keyword><style  face="normal" font="default" size="100%">COI</style></keyword><keyword><style  face="normal" font="default" size="100%">DDC</style></keyword><keyword><style  face="normal" font="default" size="100%">DNA</style></keyword><keyword><style  face="normal" font="default" size="100%">ENOLASE</style></keyword><keyword><style  face="normal" font="default" size="100%">GARLI</style></keyword><keyword><style  face="normal" font="default" size="100%">HIGHER CLASSIFICATION</style></keyword><keyword><style  face="normal" font="default" size="100%">LEPIDOPTERA</style></keyword><keyword><style  face="normal" font="default" size="100%">MACROHETEROCERA</style></keyword><keyword><style  face="normal" font="default" size="100%">MAXIMUM LIKELIHOOD</style></keyword><keyword><style  face="normal" font="default" size="100%">MTDNA</style></keyword><keyword><style  face="normal" font="default" size="100%">PHYLOGENY</style></keyword><keyword><style  face="normal" font="default" size="100%">ROGUE TAXA</style></keyword><keyword><style  face="normal" font="default" size="100%">TINEOIDEA</style></keyword></keywords><dates><year><style  face="normal" font="default" size="100%">2013</style></year><pub-dates><date><style  face="normal" font="default" size="100%">03/2013</style></date></pub-dates></dates><volume><style face="normal" font="default" size="100%">8</style></volume><pages><style face="normal" font="default" size="100%">e58568</style></pages><language><style face="normal" font="default" size="100%">eng</style></language><abstract><style face="normal" font="default" size="100%">&lt;p&gt;&amp;quot;&lt;em&gt;Background&lt;/em&gt;: Higher-level relationships within the Lepidoptera, and particularly within the species-rich subclade Ditrysia, are&lt;br /&gt;
	generally not well understood, although recent studies have yielded progress. We present the most comprehensive&lt;br /&gt;
	molecular analysis of lepidopteran phylogeny to date, focusing on relationships among superfamilies.&lt;br /&gt;
	&lt;br /&gt;
	&lt;em&gt;Methodology / Principal Findings&lt;/em&gt;: 483 taxa spanning 115 of 124 families were sampled for 19 protein-coding nuclear&lt;br /&gt;
	genes, from which maximum likelihood tree estimates and bootstrap percentages were obtained using GARLI. Assessment&lt;br /&gt;
	of heuristic search effectiveness showed that better trees and higher bootstrap percentages probably remain to be&lt;br /&gt;
	discovered even after 1000 or more search replicates, but further search proved impractical even with grid computing.&lt;br /&gt;
	Other analyses explored the effects of sampling nonsynonymous change only versus partitioned and unpartitioned total&lt;br /&gt;
	nucleotide change; deletion of rogue taxa; and compositional heterogeneity. Relationships among the non-ditrysian&lt;br /&gt;
	lineages previously inferred from morphology were largely confirmed, plus some new ones, with strong support. Robust&lt;br /&gt;
	support was also found for divergences among non-apoditrysian lineages of Ditrysia, but only rarely so within Apoditrysia.&lt;br /&gt;
	Paraphyly for Tineoidea is strongly supported by analysis of nonsynonymous-only signal; conflicting, strong support for&lt;br /&gt;
	tineoid monophyly when synonymous signal was added back is shown to result from compositional heterogeneity.&lt;br /&gt;
	&lt;br /&gt;
	&lt;em&gt;Conclusions / Significance&lt;/em&gt;: Support for among-superfamily relationships outside the Apoditrysia is now generally strong.&lt;br /&gt;
	Comparable support is mostly lacking within Apoditrysia, but dramatically increased bootstrap percentages for some nodes&lt;br /&gt;
	after rogue taxon removal, and concordance with other evidence, strongly suggest that our picture of apoditrysian&lt;br /&gt;
	phylogeny is approximately correct. This study highlights the challenge of finding optimal topologies when analyzing&lt;br /&gt;
	hundreds of taxa. It also shows that some nodes get strong support only when analysis is restricted to nonsynonymous&lt;br /&gt;
	change, while total change is necessary for strong support of others. Thus, multiple types of analyses will be necessary to&lt;br /&gt;
	fully resolve lepidopteran phylogeny.&amp;quot;&lt;/p&gt;
</style></abstract><issue><style face="normal" font="default" size="100%">3</style></issue><section><style face="normal" font="default" size="100%">e58568</style></section></record></records></xml>