Sphingidae Taxonomic Inventory

Creating a taxonomic e-science

Chromosome-level genome assembly of Theretra japonica (Lepidoptera: Sphingidae)

Publication Type:Journal Article
Year of Publication:2024
Authors:M. Yan, Su, B. - S., Huang, Y. - X., Xu, Z. - B., Jiang, Z. - H., Wang, X.
Journal:Scientific Data
Volume:11
Start Page:770
Pagination:770
Keywords:CHINA, GENE ANNOTATION, GENOME ASSEMBLY, SPHINGIDAE, THERETRA, WORLDMAP1
Abstract:

"Theretra japonica is an important pollinator and agricultural pest in the family Sphingidae with a wide range of host plants. High-quality genomic resources facilitate investigations into behavioral ecology, morphological and physiological adaptations, and the evolution of genomic architecture. However, chromosome-level genome of T. japonica is still lacking. Here we sequenced and assembled the high-quality genome of T. japonica by combining PacBio long reads, Illumina short reads, and Hi-C data. The genome was contained in 95 scaffolds with an accumulated length of 409.55 Mb (BUSCO calculated a genome completeness of 99.2%). The 29 pseudochromosomes had a combined length of 403.77 Mb, with a mapping rate of 98.59%. The genomic characterisation of T. japonica will contribute to further studies for Sphingidae and Lepidoptera."

URL:https://doi.org/10.1038/s41597-024-03500-z
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