Sphingidae Taxonomic Inventory

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De novo long-read genome assembly and annotation of the Luna Moth (Actias luna) fully resolves repeat-rich silk genes

Publication Type:Journal Article
Year of Publication:2024
Authors:A. Markee, Godfrey, R. K., Frandsen, P. B., Weng, Y. - M., Triant, D. A., Kawahara, A. Y.
Journal:Genome Biology and Evolution
Volume:16
Issue:7
Start Page:evae148
Pagination:evae148
Date Published:3/7/2024
Type of Article:Advance access
Keywords:ACTIAS, FIBROIN, GENOME ASSEMBLY, PACBIO LONG READS, SATURNIIDAE, SILK
Abstract:

"We present the first long-read de novo assembly and annotation of the luna moth (Actias luna) and provide the full characterization of heavy chain fibroin (h-fibroin), a long and highly repetitive gene (>20 kb) essential in silk fiber production. There are >160,000 described species of moths and butterflies (Lepidoptera), but only within the last 5 years have we begun to recover high-quality annotated whole genomes across the order that capture h-fibroin. Using PacBio HiFi reads, we produce the first high-quality long-read reference genome for this species. The assembled genome has a length of 532 Mb, a contig N50 of 16.8 Mb, an L50 of 14 contigs, and 99.4% completeness (BUSCO). Our annotation using Bombyx mori protein and A. luna RNAseq evidence captured a total of 20,866 genes at 98.9% completeness with 10,267 functionally annotated proteins and a full-length h-fibroin annotation of 2,679 amino acid residues."

URL:https://doi.org/10.1093/gbe/evae148
DOI:10.1093/gbe/evae148
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