| Publication Type: | Journal Article |
| Year of Publication: | 2024 |
| Authors: | A. Markee, Godfrey, R. K., Frandsen, P. B., Weng, Y. - M., Triant, D. A., Kawahara, A. Y. |
| Journal: | Genome Biology and Evolution |
| Volume: | 16 |
| Issue: | 7 |
| Start Page: | evae148 |
| Pagination: | evae148 |
| Date Published: | 3/7/2024 |
| Type of Article: | Advance access |
| Keywords: | ACTIAS, FIBROIN, GENOME ASSEMBLY, PACBIO LONG READS, SATURNIIDAE, SILK |
| Abstract: | "We present the first long-read de novo assembly and annotation of the luna moth (Actias luna) and provide the full characterization of heavy chain fibroin (h-fibroin), a long and highly repetitive gene (>20 kb) essential in silk fiber production. There are >160,000 described species of moths and butterflies (Lepidoptera), but only within the last 5 years have we begun to recover high-quality annotated whole genomes across the order that capture h-fibroin. Using PacBio HiFi reads, we produce the first high-quality long-read reference genome for this species. The assembled genome has a length of 532 Mb, a contig N50 of 16.8 Mb, an L50 of 14 contigs, and 99.4% completeness (BUSCO). Our annotation using Bombyx mori protein and A. luna RNAseq evidence captured a total of 20,866 genes at 98.9% completeness with 10,267 functionally annotated proteins and a full-length h-fibroin annotation of 2,679 amino acid residues." |
| URL: | https://doi.org/10.1093/gbe/evae148 |
| DOI: | 10.1093/gbe/evae148 |